One verdict, always with a receipt
Every answer, claim, or discovery resolves to one of three recommendations, plus a
grounded-confidence score (the share of checkable claims that resolved to a real source):
🟢 pass — checkable claims grounded, nothing flagged
🟠 review — weak, single-source, or unverifiable; a human should look
🔴 reject — grounded on retracted, contradicted, or unsafe evidence
The cardinal rule: biosingularity never
asserts a claim is grounded without a receipt — a link to the exact record behind the verdict. A confident
false “pass” is the only unforgivable failure, so anything it cannot verify is held for review, never waved
through. Verdicts are deterministic: the same input yields the same result every time.
This is a design property, not a marketing number: a claim is only marked
grounded when a receipt exists, and a discovery is only publish when something positively
grounded — everything unverifiable degrades to review. The verifier is measured against a labelled claim
set (precision / recall over known-good and known-bad claims) that grows with every rule and source added.
What it checks — and the rule behind each
Each checkable part of an answer is verified against a primary source. No single
heuristic decides anything — the verdict is the evidence.
Cited references
Every DOI is resolved to its PubMed record and checked for a retraction,
retraction notice, or published erratum. A retracted citation is an automatic reject, with the
retraction-notice PMID as the receipt.
Source: PubMed / NCBI E-utilities (live).
Variant pathogenicity
A “pathogenic” claim is checked against ClinVar, its population frequency in
gnomAD (ACMG BA1 ≥5% → reject, BS1 ≥1% → review,
using the highest sub-population / popmax), and the dbNSFP in-silico panel
(SIFT/PolyPhen/CADD/REVEL/AlphaMissense consensus, ACMG PP3/BP4). A variant claimed pathogenic but
common in the population is contradicted by its own frequency.
Source: ClinVar · gnomAD · dbNSFP (datalake).
Gene–disease links
An association is corroborated across DisGeNET, Open Targets, and the GWAS Catalog.
Two or more independent sources → corroborated; one → single-source (review); none → unsupported.
Overlapping sources are down-weighted so agreement isn’t double-counted.
Source: DisGeNET · Open Targets · GWAS Catalog.
Drugs & interactions
A drug is checked against ChEMBL (market withdrawal → reject; FDA black-box →
review) and the FDA Orange Book (approval, patent / exclusivity status). Two
interacting drugs are checked against DDInter — a MAJOR interaction is flagged, not
waved through as “no interaction found.”
Source: ChEMBL · FDA Orange Book · DDInter.
Generated discoveries
An AI-generated discovery is gated: its hypothesis, entities, and cited papers are all verified, and
it is only publish if something positively grounded — single-source or uncheckable is
review, never auto-published.
The trust gate for autonomous research platforms.
Freshness & honesty
A verdict is only as current as its source. biosingularity discloses the age of each dataset and
marks stale sources; the reference/retraction check is always live. It never hides a weak or absent
result behind a green.
See biosingularity freshness / health.
The browser demo vs. the full depth
This site runs the public-API subset (PubMed, Open Targets, ChEMBL,
ClinicalTrials.gov) — enough to catch retracted citations, weak gene–disease support, and withdrawn /
black-box drugs, with no sign-up. The full depth — variant pathogenicity over gnomAD/dbNSFP,
drug interactions, drug regulatory status, discovery verification, and multi-source corroboration over a
493 GB integrated datalake — runs via the CLI, the MCP connector, or the hosted API, because that data
can’t live in a browser function. Nothing is asserted without a receipt in either mode.
Read the source and docs on GitHub →
· Request access to the full-depth API →